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Pull requests: malariagen/malariagen-data-python

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Pull requests list

feat: add public cache_info() and clear_cache() API (fixes #1289)
#1295 opened Apr 14, 2026 by khushthecoder Contributor Loading…
10 tasks done
1
Fix #1280: Optimize snp_calls_to_vcf() with vectorized GT formatting
#1294 opened Apr 14, 2026 by khushthecoder Contributor Loading…
3 tasks
1
Fix: Sanitize user input passed to DataFrame.eval()/query() to prevent code injection
#1293 opened Apr 14, 2026 by kunal-10-cloud Contributor Loading…
3 tasks done
1
3
fix: expose cohort size parameters in diversity_stats
#1290 opened Apr 13, 2026 by adilraza99 Contributor Loading…
1
fix: add DeprecationWarning to geneset() and snp_dataset()
#1286 opened Apr 12, 2026 by Tanisha127 Contributor Loading…
1
2
Fix #1283: Warn and handle missing FORMAT fields in snp_calls_to_vcf()
#1284 opened Apr 10, 2026 by Yashsingh045 Contributor Loading…
1
7
Compute and plot inversion frequencies
#1282 opened Apr 10, 2026 by 31puneet Contributor Loading…
1
3
refactor: migrate karyotype tag loading to GCS and add simulated tests
#1278 opened Apr 8, 2026 by adilraza99 Contributor Loading…
1
8
Refactor XP-EHH
#1275 opened Apr 6, 2026 by 31puneet Contributor Loading…
1
add DeprecationWarning to geneset() and snp_dataset()
#1274 opened Apr 3, 2026 by ZiadXI Contributor Loading…
feat: implement variant association analysis
#1272 opened Apr 3, 2026 by 31puneet Contributor Loading…
1
1
fix: suppress misleading KeyError chain in _locate_site_class`
#1270 opened Apr 2, 2026 by blankirigaya Contributor Loading…
1
Add describe_method() for parameter-level API introspection
#1267 opened Mar 31, 2026 by anushkaxg Loading…
1
1
Add Afar1 species support for Anopheles farauti in the Pacific
#1266 opened Mar 31, 2026 by iftiquar Loading…
5 tasks
refactor: remove duplicate cache name constants in ag3.py
#1265 opened Mar 31, 2026 by opreaDO Loading…
Add TODO comment for type hint verification
#1264 opened Mar 31, 2026 by PadmanavaParui Loading…
Add describe_method() for structured parameter introspection
#1263 opened Mar 31, 2026 by caiocrocha Loading…
Refine documentation section in README.md
#1261 opened Mar 31, 2026 by MuhammadAziz032 Loading…
fix: raise ValueError on empty CNV HMM data instead of IndexError
#1258 opened Mar 31, 2026 by ADAMSmugwe Loading…
Add As1 support
#1257 opened Mar 31, 2026 by tristanpwdennis Collaborator Loading…
20
Add genomic summary helper functions for genotype data
#1256 opened Mar 30, 2026 by cleberfc23 Loading…
Optimize Pv4 Data Resource class
#1255 opened Mar 30, 2026 by Thirumalai-Nambi-S Loading…
Add experimental natural-language query parser prototype for malariagen_data
#1254 opened Mar 30, 2026 by CharithKalasi Loading…
Implement _get_file_stats utility for consistent file metadata retrieval
#1253 opened Mar 30, 2026 by varma1221 Loading…
Improve version test to enforce valid format
#1251 opened Mar 29, 2026 by Thirumalai-Nambi-S Loading…
ProTip! What’s not been updated in a month: updated:<2026-03-14.